PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS70474.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family WOX
Protein Properties Length: 221aa    MW: 24781.3 Da    PI: 8.8277
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS70474.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.43.3e-202181357
                --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox  3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                +R+t+t+eq+++L++l+++   r psa++++++++kl    +++ ++V++WFqN++a+e++
  EPS70474.1 21 TRWTPTAEQIRILKDLYYNngVRSPSADQIQRISAKLrqygKIEGKNVFYWFQNHKARERQ 81
                8*****************8678*************************************97 PP

2Wus_type_Homeobox115.42.7e-371983265
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       ++tRWtPt+eQi+iL++ly+ +G+r+P++++iqri+a+L++yGkie+kNVfyWFQN+kaRerqk+
         EPS70474.1 19 TTTRWTPTAEQIRILKDLYYnNGVRSPSADQIQRISAKLRQYGKIEGKNVFYWFQNHKARERQKK 83
                       689***************9779*****************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.33E-111183IPR009057Homeodomain-like
PROSITE profilePS5007110.7871682IPR001356Homeobox domain
SMARTSM003891.4E-61886IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.8E-82181IPR009057Homeodomain-like
CDDcd000869.02E-72183No hitNo description
PfamPF000461.2E-172181IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0080166Biological Processstomium development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MATTNGDDRA AASLASRQTT TRWTPTAEQI RILKDLYYNN GVRSPSADQI QRISAKLRQY  60
GKIEGKNVFY WFQNHKARER QKKRFTAAGE NLHHHRQGLQ ISDHLLAYAA KAAPPHRRHG  120
SADFRDCSAT PPPTFAWDAF PPPCGRSFHD QNRDEEEDAP EIETLSLFPM HSAGDDHHRL  180
PWQRRLFSSS SSSDCSGAGG SLELTLNSYG NSPLHFHSGA S
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00265DAPTransfer from AT2G17950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100154.17e-48PREDICTED: protein WUSCHEL
TrEMBLS8CT841e-166S8CT84_9LAMI; Uncharacterized protein
STRINGGLYMA11G08091.17e-43(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA76042331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.11e-39WOX family protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]